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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs56980124 chr12:132604437 A/AC 0.000224 399 15.95 13.53 8.77 KM Plot
LGG rs57041121 chr5:94011339 T/A 4.32E-5 407 14.78 17.63 9.8 KM Plot
LGG rs57067992 chr14:74356930 C/T 1.39E-7 405 14.67 17.2 3.93 KM Plot
LGG rs57078496 chr10:122641389 T/C 2.5E-5 395 16.37 14.43 17.67 KM Plot
LGG rs57165666 chr5:92773066 C/T 1.66E-5 406 15.17 15.73 18.57 KM Plot
LGG rs57296505 chr12:132574031 G/A 4.62E-5 389 16.1 13.2 7.82 KM Plot
LGG rs57474616 chr16:76251890 A/C 7.6E-7 404 15.25 16.5 5.85 KM Plot
LGG rs5760627 chr22:25164888 T/C 2.92E-5 407 14.78 15.77 15.17 KM Plot
LGG rs5760629 chr22:25165001 A/C 3.0E-5 407 15.17 15.77 14.78 KM Plot
LGG rs5760631 chr22:25165277 A/G 2.21E-5 407 14.77 15.83 15.17 KM Plot
LGG rs5760633 chr22:25165468 A/G 6.0E-5 406 14.77 15.83 15.18 KM Plot
LGG rs5760634 chr22:25165514 G/A 6.56E-5 405 14.77 15.37 16.3 KM Plot
LGG rs57613489 chr2:228080065 T/TATG 0 407 15.72 13.23 1.23 KM Plot
LGG rs57621544 chr1:154015203 CT/C 2.44E-15 399 15.63 13.63 5.4 KM Plot
LGG rs57721459 chr16:67884111 C/T 3.07E-11 401 15.17 18.97 6.47 KM Plot